当前位置: 主页 > 生物技术 > 软件工具与数据库 > 数据统计与分析

中国核酸序列数据库使用手册(14)

2005-09-30 09:13 bioguider 中国核酸序列数据库 阅读 0

Comment               多个qualifiers(例如/clone=)可参照附录表IV有关/organelle的范围

 

 

--------------------------------------------------------------------------------

Feature Key           stem_loop

Definition            发夹结构;一段双螺旋区域,由于在RNADNA或的单链上临近的互补序列间形成碱基配对


Optional qualifiers   /citation=[number]
                      /db_xref="<database>:<identifier>"                     
                      /evidence=<evidence_value>
                      /function="text"
                      /gene="text"
                      /label=feature_label
                      /map="text"
                      /note="text"
                      /partial
                      /standard_name="text"
                      /usedin=accnum:feature_label

 


--------------------------------------------------------------------------------

Feature Key           STS

Definition           序列标签位点。短的,单一拷贝的DNA序列,可作为基因图上的标记,可通过PCR方法检测。通过一系列的STSs的顺序对基因组区域作图

Optional qualifiers   /citation=[number]
                      /db_xref="<database>:<identifier
                      /evidence=<evidence_value>                     
                      /standard_name="text"
                      /gene="text"
                      /label=feature_label     
                      /usedin=accnum:feature_label
                      /note="text"
                      /partial
                      /map="text"

Molecule scope        DNA

Parent key            misc_binding

Comment               STS位置包括在primer_bind或primers中的引物 l

 

--------------------------------------------------------------------------------

Feature Key           TATA_signal

Definition           TATA框;Goldberg-Hogness框;一个保守的富含AT,大约在真核生物RNA聚合酶II转录子起始位点前25bp,保守序列=TATA(A/T)A(A/T)[1,2]

Optional qualifiers   /citation=[number]
                      /db_xref="<database>:<identifier>"                     
                      /evidence=<evidence_value>
                      /gene="text"
                      /label=feature_label
                      /map="text"
                      /note="text"
                      /partial
                      /usedin=accnum:feature_label

Organism scope        Eukaryotes and eukaryotic viruses

Molecule scope        DNA

References            [1] Efstratiadis, A.  et al.  Cell 21, 653-668 (1980)
                                [2] Corden, J., et al.  "Promoter sequences of eukaryotic protein-encoding genes"  Science 209, 1406-1414 (1980)

 


--------------------------------------------------------------------------------

Feature Key           terminator

Definition            终止子;定位在转录子两端的DNA序列,引起RNA聚合酶转录的终止

 

Optional qualifiers   /citation=[number]
                      /db_xref="<database>:<identifier>"                     
                      /evidence=<evidence_value>
                      /gene="text"
                      /label=feature_label
                      /map="text"
                      /note="text"
                      /partial
                      /standard_name="text"
                      /usedin=accnum:feature_label

Molecule scope        DNA

 


--------------------------------------------------------------------------------

Feature Key           transit_peptide

Definition            编码转运多肽的序列;一个核编码的细胞器蛋白的N端的编码序列;

t
Optional qualifiers   /citation=[number]
                      /db_xref="<database>:<identifier>"                     
                      /evidence=<evidence_value>
                      /function="text"
                      /gene="text"
                      /label=feature_label
                      /map="text"
                      /note="text"
                      /partial
                      /product="text"
                      /pseudo
                      /standard_name="text"
                      /usedin=accnum:feature_label

发表评论