Qualifier /specific_host= Definition 自然宿主。 Value format "text" Example /specific_host="Rhizobium NGR234"
Qualifier /specimen_voucher= Definition 该序列物种的个人或收藏部门的标识,通常是研究所。 Value format "text" Example /specimen_voucher="Smith s. n. 4-IV-1995 (U. S. Natl. Herbarium)""
Qualifier /standard_name= Definition 承认的标准名称。 Value format "text" Example /standard_name="dotted" Comment 用/standard_name来确定基因的全称,用/gene给出基因简称(在本例中/gene="Dt")
Qualifier /strain= Definition 菌株 Value format "text" Example /strain="BALB/c"
Qualifier /sub_clone= Definition 亚克隆。 Value format "text" Example /sub_clone="lambda-hIL7.20g" Comment 对一个source应该只有一个对应的亚克隆号码,如果要标识序列是从多个亚克隆中来的,应该使用多个source。
Qualifier /sub_species= Definition 物种的亚种名称。 Value format "text" Example /sub_species="japonica"
Qualifier /sub_strain= Definition 亚菌株。 Value format "text" Example /sub_strain="abis"
Qualifier /tissue_lib= Definition 组织文库。 Value format "text" Example /tissue_lib="tissue library 772"
Qualifier /tissue_type= Definition 组织类型。 Value format "text" Example /tissue_type="liver"
Qualifier /translation= Definition 根据标准密码子表或由/transl_table、/transl_except、/codon确定的密码子表自动生成的单字符蛋白序列。 Value format IUPAC单字符标识的氨基酸, "X"表示例外的氨基酸‘ Example /translation="MASTFPPWYRGCASTPSLKGLIMCTW" Comment 只在CDS中用. 除了有/pseudo的CDS外,该qualifier是CDS必须要的填的。参考/transl_table的密码子表定义。
Qualifier /transl_except= Definition 翻译的例外,单个氨基酸密码子的例外。 Value format (pos:location,aa:<amino_acid>)其中amino_acid是在location位置核酸序列编码的氨基酸(三字符) Example /transl_except=(pos:213..215,aa:Trp) /transl_except=(pos:1017,aa:TERM) /transl_except=(pos:2000..2001,aa:TERM) /transl_except=(pos:X22222:15..17,aa:Ala) Comment 如果氨基酸不在规定的列表中,用如'/transl_except=(pos:213..215,aa:OTHER)'并有'/note="不常见的氨基酸名称"'的方式表示。对于修饰氨基酸selenocysteine用三字符'Sec'表示(序列中单字符用'U'表示)。/transl_except=(pos:1002..1004,aa:Sec)。对需要在mRNA尾部加A才可以形成终止密码子TAA的部分终止密码,用单个碱基位置或位置区域来表示,如/transl_except=(pos:1017,aa:TERM)、/transl_except=(pos:2000..2001,aa:TERM)
Qualifier /transl_table= Definition 非通用的遗传密码子表。 Value format <integer>; 1=universal table 1;2=non-universal table 2;... Example /transl_table=4 Comment 如果仍然有密码子在指定的密码子表中是例外的,用/codon或/transl_except补充。
Qualifier /transposon= Definition 转座子。 Value format "text" Example /transposon="Tn9"
Qualifier /usedin= Definition 表示该feature在其他的序列仍然用到。 Value format Accession-number:feature-name 或 Database_name::Acc_number:feature_label Example /usedin=X10087:proteinx Comment Database_name 是有该acc-number的序列所在的数据库的简写。
Qualifier /variety= Definition 品种。 Value format "text" Example /variety="Bright Yellow 4" Comment 主要在Source这个feature中用。
Qualifier /virion Definition 病毒粒子。 Value format none Example /virion
返回页首 Appendix I Genetic Code Tables Genetic Code Tables Authority International Sequence Databank Collaboration Contact NCBI Scope /transl_table qualifier
Genetic Code [1] Standard AAs = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG Starts = ---M---------------M---------------M---------------------------- Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
Genetic Code [2] Vertebrate Mitochondrial
AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG Starts = --------------------------------MMMM---------------M------------ Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG Genetic Code [3] Yeast Mitochondrial AAs = FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG Starts = -----------------------------------M---------------------------- Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
Genetic Code [4] Mold, Protozoan, Coelenterate Mitochondrial and Mycoplasma/Spiroplasma AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG Starts = --MM---------------M------------MMMM---------------M------------ Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
Genetic Code [5] Invertebrate Mitochondrial AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG Starts = ---M----------------------------MMMM---------------M------------ Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
Genetic Code [6] Ciliate Macronuclear and Dasycladacean AAs = FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG Starts = -----------------------------------M---------------------------- Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG Genetic Code [9] Echinoderm Mitochondrial AAs = FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG Starts = -----------------------------------M---------------------------- Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
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